Ecography · 2015

mangal - making ecological network analysis simple

Poisot T., Baiser B., Dunne J.A., Kefi S., Massol F., Mouquet N., Romanuk T.N., Stouffer D.B., Wood S.A., Gravel D.

doi.org/10.1111/ecog.00976
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Key Message

The study of ecological networks is severely limited by 1) the difficulty to access data, 2) the lack of a standardized way to link meta-data with interactions, and 3) the disparity of formats in which ecological networks themselves are stored and represented.

To overcome these limitations, we have designed a data specifi cation for ecological networks. We implemented a database respecting this standard, and released an R package (rmangal) allowing users to programmatically access, curate, and deposit data on ecological interactions.

In this article, we show how these tools, in conjunction with other frameworks for the programmatic manipulation of open ecological data, streamlines the analysis process and improves replicability and reproducibility of ecological network studies.

MANGAL web site

Figure from Poisot et al. 2015
Cumulative number of networks, either across the entire database, or for different types of interactions in the MANGAL database.
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